SMTL ID : 2cw7.1

Crystal structure of intein homing endonuclease II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.1, Y.75, T.93, S.94, G.95 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.1, A:S.1, A:T.93, A:G.95 SO4.2: 6 residues within 4Å: Chain A: T.262, G.265, F.266, P.339, K.340, K.341 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.262, A:T.262, A:F.266, A:P.339, A:K.341 Water bridges: A:T.262 SO4.3: 2 residues within 4Å: Chain A: R.83, R.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.421 Salt bridges: A:R.83, A:R.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsumura, H. et al., Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1. Proteins (2006)

Release Date

2006-04-18

Peptides

Endonuclease PI-PkoII: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endonuclease PI-PkoII

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