SMTL ID : 2cz5.1

Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 8 residues within 4Å: Chain A: A.5, K.29, G.163, I.183, V.184, G.185, R.186 Chain B: I.63 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.5 Hydrogen bonds: A:G.185, A:R.186, A:R.186, A:Y.189 Water bridges: A:D.7, A:K.29, A:K.29, A:D.57, A:D.57, A:S.109, A:I.164, A:I.183, A:A.187 Salt bridges: A:K.29, A:K.59, A:R.186, A:R.186 CIT.2: 10 residues within 4Å: Chain B: A.5, D.7, K.29, P.162, G.163, I.183, V.184, G.185, R.186 Ligands: GOL.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:A.5 Hydrogen bonds: B:G.185, B:R.186, B:R.186 Water bridges: B:K.29, B:I.183, B:A.187 Salt bridges: B:K.29, B:R.186, B:R.186

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: D.62, I.63 Chain B: K.29, K.59, P.162 Ligands: CIT.2 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.29, B:K.59, A:D.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arai, R. et al., Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3. To be Published

Release Date

2006-01-11

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-phosphate decarboxylase

Related Entries With Identical Sequence