- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.3: 18 residues within 4Å:- Chain A: N.8, G.9, Y.10, G.11, T.12, I.13, T.35, A.54, A.86, T.87, P.88, G.89, Q.109, G.111, C.141, R.167, D.170, Q.298
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:I.13, A:I.13
- Hydrogen bonds: A:Y.10, A:T.12, A:T.12, A:T.12, A:I.13, A:T.87, A:G.111, A:R.167, A:D.170
- Water bridges: A:Y.10, A:G.11, A:G.14, A:T.33, A:N.95, A:N.95, A:D.170, A:D.170
NAD.5: 20 residues within 4Å:- Chain B: N.8, G.9, Y.10, G.11, T.12, I.13, T.33, T.35, A.54, A.86, T.87, P.88, G.89, Q.109, G.111, C.141, R.167, D.170, Q.298, V.302
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:I.13, B:V.302
- Hydrogen bonds: B:Y.10, B:Y.10, B:T.12, B:T.12, B:I.13, B:T.87, B:G.111, B:R.167, B:D.170
- Water bridges: B:N.8, B:G.11, B:G.14, B:K.34, B:K.36, B:K.36, B:N.95
NAD.7: 22 residues within 4Å:- Chain C: N.8, G.9, Y.10, G.11, T.12, I.13, G.14, T.33, T.35, A.54, A.86, T.87, P.88, G.89, Q.109, G.110, G.111, C.141, R.167, D.170, Q.298, V.302
20 PLIP interactions:20 interactions with chain C- Hydrophobic interactions: C:I.13, C:I.13, C:V.302
- Hydrogen bonds: C:N.8, C:Y.10, C:T.12, C:T.12, C:I.13, C:G.14, C:T.87, C:G.111, C:R.167, C:D.170
- Water bridges: C:G.11, C:K.34, C:T.35, C:T.35, C:T.35, C:N.95, C:N.95
NAD.9: 18 residues within 4Å:- Chain D: N.8, G.9, Y.10, G.11, T.12, I.13, A.54, A.86, T.87, P.88, G.89, Q.109, G.111, C.141, R.167, D.170, Q.298, E.299
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:I.13
- Hydrogen bonds: D:Y.10, D:T.12, D:T.12, D:T.12, D:I.13, D:T.87, D:G.111, D:R.167, D:D.170
- Water bridges: D:N.8, D:G.11, D:G.14, D:K.34
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ito, K. et al., Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from Pyrococcus horikoshii OT3. To be Published
- Release Date
- 2006-01-13
- Peptides
- Glyceraldehyde-3-phosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ito, K. et al., Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from Pyrococcus horikoshii OT3. To be Published
- Release Date
- 2006-01-13
- Peptides
- Glyceraldehyde-3-phosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D