SMTL ID : 2czd.1

Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 at 1.6 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.1: 8 residues within 4Å: Chain A: A.5, D.7, K.29, N.31, D.57, I.183 Chain B: I.63, T.66 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.7, A:D.7, A:K.29 Water bridges: A:L.6, B:T.66

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: R.68, R.72, L.99 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.68, A:R.72, A:R.72 Water bridges: A:R.68 GOL.3: 1 residues within 4Å: Chain A: R.68 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.68, A:R.68, A:E.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arai, R. et al., Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 at 1.6 A resolution. To be Published

Release Date

2006-01-13

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-phosphate decarboxylase

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