SMTL ID : 2czf.1

Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 complexed with XMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x XMP: XANTHOSINE-5'-MONOPHOSPHATE(Non-covalent)

XMP.1: 12 residues within 4Å: Chain A: A.5, D.7, K.29, K.59, S.109, I.137, P.162, G.163, I.183, G.185, R.186 Chain B: I.63 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.29, A:K.59, A:S.109, A:H.110, A:G.163, A:G.185, A:R.186 Water bridges: A:D.7, A:K.29, A:I.164, A:A.187 Salt bridges: A:R.186 XMP.2: 15 residues within 4Å: Chain A: I.63 Chain B: A.5, D.7, K.29, N.31, D.57, S.109, H.110, P.162, I.164, A.166, Q.167, V.184, G.185, R.186 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:D.7, B:K.29, B:D.57, B:S.109, B:I.164, B:Q.167, B:G.185, B:R.186, B:R.186 Water bridges: B:D.7, B:D.57, B:K.59, B:S.109, B:S.109, B:G.163, B:A.166, B:R.186, B:A.187 Salt bridges: B:R.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ito, K. et al., Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 complexed with XMP. To be Published

Release Date

2006-01-13

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-phosphate decarboxylase

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