SMTL ID : 2d1z.2 (1 other biounit)

Crystal structure of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: S.97, R.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.145 Water bridges: A:G.98 GOL.2: 6 residues within 4Å: Chain A: K.48, W.85, Q.88, H.128, W.266, W.274 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.48, A:Q.88, A:H.128 Water bridges: A:N.45, A:K.48, A:Q.88, A:W.266 GOL.3: 4 residues within 4Å: Chain A: K.24, T.271, D.272, S.273 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.24, A:K.24 Water bridges: A:E.44, A:E.44, A:E.44, A:S.273, A:S.273, A:S.276 GOL.4: 6 residues within 4Å: Chain A: Y.172, N.173, H.207, N.209, W.274, R.275 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.207, A:N.209, A:R.275, A:R.275 Water bridges: A:N.173, A:H.207 GOL.5: 5 residues within 4Å: Chain A: D.325, N.328, Y.340, H.343, N.347 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.328, A:N.328, A:H.343, A:N.347, A:Q.348 GOL.6: 8 residues within 4Å: Chain A: D.408, A.409, V.410, G.411, G.412, Q.421, Y.423, N.430 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.408, A:G.411, A:G.412, A:Q.421, A:N.430 Water bridges: A:S.426

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, R. et al., Crystallographic snapshots of an entire reaction cycle for a retaining xylanase from Streptomyces olivaceoviridis E-86. J.Biochem. (2009)

Release Date

2006-10-10

Peptides

ENDO-1,4-BETA-D-XYLANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ENDO-1,4-BETA-D-XYLANASE

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