SMTL ID : 2d4w.1

Crystal structure of glycerol kinase from Cellulomonas sp. NT3060

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 8 residues within 4Å: Chain A: Q.80, R.81, E.82, W.101, R.189, D.245, Q.246, F.270 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.101, A:W.101, A:Q.246 Hydrogen bonds: A:R.81, A:R.81, A:R.81, A:R.189, A:D.245 MPD.2: 8 residues within 4Å: Chain A: V.309, L.313, W.316, P.347, A.348 Chain B: L.368, T.369, R.370 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.313, A:W.316, A:W.316, A:A.348 Hydrogen bonds: A:A.348 MPD.3: 8 residues within 4Å: Chain B: R.81, E.82, W.101, R.189, D.245, Q.246, F.270, E.304 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.101, B:Q.246, B:F.270 Hydrogen bonds: B:R.81, B:R.81, B:R.81, B:R.189, B:D.245 Water bridges: B:E.304 MPD.4: 7 residues within 4Å: Chain A: L.368, R.370 Chain B: V.309, L.313, W.316, P.347, A.348 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.313, B:W.316, B:A.348, A:L.368 Hydrogen bonds: B:A.348

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imada, K. et al., Structure of glycerol kinase from Cellulomonas sp. NT3060. To be Published

Release Date

2006-11-14

Peptides

glycerol kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

glycerol kinase