SMTL ID : 2d62.1

Crystal structure of multiple sugar binding transport ATP-binding protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: E.33, D.211 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.32, A:Q.189 SO4.2: 3 residues within 4Å: Chain A: P.40, S.41, H.201 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.41 Salt bridges: A:H.201 SO4.3: 4 residues within 4Å: Chain A: P.97, H.98, K.139, R.141 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.97 Water bridges: A:R.141 Salt bridges: A:H.98, A:K.139, A:R.141 SO4.4: 3 residues within 4Å: Chain A: M.99, D.103, K.110 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.103 Salt bridges: A:K.110 SO4.5: 5 residues within 4Å: Chain A: E.168, S.171, N.172, R.178, H.201 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.172, A:N.172 Water bridges: A:R.178, A:R.178 Salt bridges: A:R.178, A:H.201 SO4.6: 5 residues within 4Å: Chain A: D.299, S.301, F.302, S.346, K.347 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.301, A:S.346, A:K.347 SO4.7: 6 residues within 4Å: Chain A: I.2, G.3, A.5, E.28, I.29, K.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.3, A:E.28 Water bridges: A:D.31 SO4.9: 2 residues within 4Å: Chain B: E.33, D.211 3 PLIP interactions: 3 interactions with chain B Water bridges: B:G.32, B:E.33, B:Q.189 SO4.10: 3 residues within 4Å: Chain B: P.40, S.41, H.201 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.41 Salt bridges: B:H.201 SO4.11: 4 residues within 4Å: Chain B: P.97, H.98, K.139, R.141 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:P.97 Water bridges: B:R.141 Salt bridges: B:H.98, B:K.139, B:R.141 SO4.12: 3 residues within 4Å: Chain B: M.99, D.103, K.110 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.110 SO4.13: 5 residues within 4Å: Chain B: E.168, S.171, N.172, R.178, H.201 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.172, B:N.172 Water bridges: B:R.178, B:D.202 Salt bridges: B:R.178, B:H.201 SO4.14: 5 residues within 4Å: Chain B: D.299, S.301, F.302, S.346, K.347 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.301, B:S.346, B:K.347 SO4.15: 6 residues within 4Å: Chain B: I.2, G.3, A.5, E.28, I.29, K.30 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.3, B:E.28 Water bridges: B:D.31

2 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.8: 8 residues within 4Å: Chain A: P.40, S.41, G.42, C.43, G.44, K.45, T.46, T.47 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.42, A:C.43, A:G.44, A:G.44, A:K.45, A:T.46, A:T.47, A:T.47 Water bridges: A:S.41, A:K.45, A:K.45, A:T.46 Salt bridges: A:K.45 POP.16: 8 residues within 4Å: Chain B: P.40, S.41, G.42, C.43, G.44, K.45, T.46, T.47 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.42, B:C.43, B:G.44, B:G.44, B:K.45, B:T.46, B:T.46, B:T.47 Water bridges: B:S.41, B:K.45, B:K.45, B:T.47 Salt bridges: B:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lokanath, N.K. et al., Crystal structure of multiple sugar binding transport ATP-binding protein. To be Published

Release Date

2006-05-08

Peptides

multiple sugar-binding transport ATP-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

multiple sugar-binding transport ATP-binding protein