SMTL ID : 2dck.1

A tetragonal-lattice structure of alkaliphilic XynJ from Bacillus sp. 41M-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.240, E.242, N.259, D.349 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.240, A:E.242, A:N.259, A:D.349, H2O.195 CA.2: 4 residues within 4Å: Chain A: Y.264, D.340, W.344, D.345 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.264, A:D.340, A:W.344, A:D.345, H2O.275

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: G.39, Y.40, G.77, K.78, L.225, I.227 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.77, A:I.227 GOL.4: 3 residues within 4Å: Chain A: N.95, Y.96, S.222 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.96, A:S.222 Water bridges: A:N.95 GOL.5: 1 residues within 4Å: Chain A: Y.264 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.252, A:Y.264 GOL.6: 4 residues within 4Å: Chain A: V.318, Y.319, T.320, N.322 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.318, A:T.320, A:N.322 Water bridges: A:T.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ihsanawati et al., A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1. To be Published

Release Date

2007-03-20

Peptides

xylanase J: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

xylanase J

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