SMTL ID : 2ddz.1

Protein of Unknown Function from Pyrococcus horikoshi

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-hexamer

Ligands

8 x GAI: GUANIDINE(Non-covalent)

GAI.1: 2 residues within 4Å: Chain A: P.79 Chain C: P.129 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:P.79, C:P.129 GAI.2: 4 residues within 4Å: Chain A: R.12, I.14, N.29, F.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.12, A:R.12, A:N.29 GAI.4: 1 residues within 4Å: Chain B: N.101 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.101 GAI.6: 1 residues within 4Å: Chain C: E.105 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:E.105 GAI.8: 2 residues within 4Å: Chain D: R.12, F.30 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.12, D:R.12 GAI.10: 2 residues within 4Å: Chain E: R.187, W.188 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:R.187, E:W.188 Water bridges: E:R.187, E:T.190 pi-Cation interactions: E:W.188, E:W.188 GAI.11: 4 residues within 4Å: Chain E: R.12, I.14, N.29, F.30 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.12, E:N.29 GAI.13: 4 residues within 4Å: Chain E: W.100 Chain F: W.100, I.104, E.105 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain F pi-Cation interactions: E:W.100, F:W.100 Hydrogen bonds: F:E.105, F:E.105

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: Y.16, E.50, M.51, V.52, D.53, D.56 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.16, A:E.50, A:V.52, A:D.53, A:D.56, A:D.56, A:H.135 GOL.5: 7 residues within 4Å: Chain B: Y.16, E.50, M.51, V.52, D.53, I.124, H.135 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.52, B:D.53, B:H.135 Water bridges: B:Y.16, B:E.50 GOL.7: 8 residues within 4Å: Chain C: Y.16, E.50, M.51, V.52, D.53, D.56, I.63, I.124 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.50, C:V.52, C:D.53, C:D.56, C:H.135 Water bridges: C:D.53 GOL.9: 7 residues within 4Å: Chain D: Y.16, M.51, V.52, D.53, D.56, I.124, H.135 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Y.16, D:V.52, D:D.53, D:D.56, D:H.135 GOL.12: 7 residues within 4Å: Chain E: Y.16, E.50, M.51, V.52, D.53, D.56, I.124 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:E.50, E:V.52, E:D.53, E:D.53 Water bridges: E:H.135 GOL.14: 7 residues within 4Å: Chain F: Y.16, E.50, M.51, V.52, D.53, D.56, I.124 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:Y.16, F:E.50, F:V.52, F:D.53, F:D.56, F:D.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rehse, P.H. et al., X-ray structure of Unknown Protein from Pyrococcus horikoshi. To be Published

Release Date

2007-02-13

Peptides

190aa long hypothetical protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

190aa long hypothetical protein