SMTL ID : 2deu.2 (1 other biounit)

Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 15 residues within 4Å: Chain A: U.35 Chain B: G.23, M.24, S.25, S.30, L.47, F.48, M.49, K.119, T.138, G.139, H.140, S.207, F.212 Ligands: SO4.2 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:M.49, B:M.49, B:G.139, B:G.139, B:S.207

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain B: S.25, G.27, V.28, D.29, S.30 Ligands: AMP.1 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.25, B:S.25, B:D.29, B:D.29, B:S.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Numata, T. et al., Snapshots of tRNA sulphuration via an adenylated intermediate. Nature (2006)

Release Date

2006-08-15

Peptides

tRNA-specific 2-thiouridylase mnmA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

tRNA-specific 2-thiouridylase mnmA

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