SMTL ID : 2ds8.1

Structure of the ZBD-XB complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x ALA- LEU- ARG- VAL- VAL- LYS: SspB-tail peptide(Non-covalent)

ALA-LEU-ARG-VAL-VAL-LYS.1: 12 residues within 4Å: Chain A: F.16, L.42, I.46 Chain B: L.12, Q.21, V.24, R.25, K.26, L.27, I.28, A.29, Y.34 16 PLIP interactions: 5 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:F.16, A:L.42, A:I.46, A:I.46, B:L.27 Water bridges: A:F.16 Hydrogen bonds: B:V.24, B:L.27, B:L.27, B:L.27, B:L.27, B:A.29, B:A.29, B:Y.34, B:Y.34 Salt bridges: B:K.26 ALA-LEU-ARG-VAL-VAL-LYS.2: 14 residues within 4Å: Chain A: L.12, Q.21, V.24, R.25, K.26, L.27, I.28, A.29, Y.34 Chain B: F.16, C.39, L.42, C.43, I.46 13 PLIP interactions: 10 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.12, A:A.29, A:Y.34, B:F.16, B:L.42, B:I.46 Hydrogen bonds: A:V.24, A:L.27, A:L.27, A:L.27, A:A.29, A:A.29 Salt bridges: A:K.26

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.14, C.17, C.36, C.39 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.14, A:C.17, A:C.36, A:C.39 ZN.4: 4 residues within 4Å: Chain B: C.14, C.17, C.36, C.39 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.14, B:C.17, B:C.36, B:C.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, E.Y. et al., Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX. J.Mol.Biol. (2007)

Release Date

2007-02-13

Peptides

ATP-dependent Clp protease ATP-binding subunit clpX: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATP-dependent Clp protease ATP-binding subunit clpX

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