SMTL ID : 2e1r.1

Structure of eEF2 in complex with a sordarin derivative

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

monomer

Ligands

1 x SOD: (1S,4S,5S,6R,9S,11S)-6-CHLORO-9-FORMYL-13-ISOPROPYL-5-METHYL-2-({[(3AR,5R,7R ,7AS)-7-METHYL-3-METHYLENEHEXAHYDRO-2H-FURO[2,3-C]PYRAN-5-YL]OXY}METHYL)TETR ACYCLO[7.4.0.02,11.04,8]TRIDEC-12-ENE-1-CARBOXYLIC ACI(Non-covalent)

SOD.1: 18 residues within 4Å: Chain A: P.487, V.488, Q.490, L.519, Y.521, S.523, E.524, I.529, V.560, V.561, A.562, R.564, P.727, F.729, V.774, M.796, F.798, W.801 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.529, A:P.727, A:F.729, A:V.774, A:M.796, A:F.798, A:F.798, A:F.798, A:F.798, A:W.801 Hydrogen bonds: A:E.524, A:A.562 Halogen bonds: A:R.564

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 14 residues within 4Å: Chain A: H.27, V.28, D.29, H.30, G.31, K.32, S.33, T.34, N.158, K.159, D.161, S.213, G.214, L.215 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:H.27, A:H.30, A:G.31, A:K.32, A:S.33, A:T.34, A:T.34, A:N.158, A:K.159, A:K.159, A:G.214, A:L.215 Salt bridges: A:D.161 pi-Cation interactions: A:K.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soe, R. et al., Sordarin derivatives induce a novel conformation of the yeast ribosome translocation factor eEF2. J.Biol.Chem. (2007)

Release Date

2006-11-14

Peptides

Elongation factor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation factor 2

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