SMTL ID : 2e7u.1

Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: N.211, F.399, E.400 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.400 NA.2: 3 residues within 4Å: Chain A: G.156, G.158, L.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.156, A:L.160 NA.5: 3 residues within 4Å: Chain B: N.211, F.399, E.400 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.399 NA.6: 3 residues within 4Å: Chain B: G.156, G.158, L.160 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.156, B:G.158

2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.3: 13 residues within 4Å: Chain A: S.116, G.117, T.118, Y.144, H.145, E.206, N.211, D.238, V.240, M.241, K.266 Chain B: G.297, T.298 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:E.206, A:V.240 Hydrogen bonds: A:G.117, A:T.118, A:T.118, A:T.118, A:N.211, A:N.211, B:T.298, B:T.298 PMP.7: 13 residues within 4Å: Chain A: G.297, T.298 Chain B: S.116, G.117, T.118, Y.144, H.145, E.206, N.211, D.238, V.240, M.241, K.266 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:E.206, B:V.240 Hydrogen bonds: B:G.117, B:T.118, B:T.118, B:N.211, B:N.211, A:T.298, A:T.298 Water bridges: B:T.118, B:T.118

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: R.103, A.104, P.106, F.248, E.253 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.103, A:T.252 GOL.8: 5 residues within 4Å: Chain B: R.103, A.104, P.106, F.248, E.253 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.103, B:T.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mizutani, H. et al., Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Thermus thermophilus HB8. To be Published

Release Date

2007-07-17

Peptides

Glutamate-1-semialdehyde 2,1-aminomutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glutamate-1-semialdehyde 2,1-aminomutase