SMTL ID : 2e9a.1

E. coli undecaprenyl pyrophosphate synthase in complex with BPH-628

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

3 x B28: (1-HYDROXY-1-PHOSPHONO-2-[1,1';4',1'']TERPHENYL-3-YL-ETHYL)-PHOSPHONIC ACID(Non-covalent)

B28.1: 15 residues within 4Å: Chain A: M.25, D.26, G.27, N.28, G.29, R.39, H.43, A.47, A.69, F.70, S.71, S.72, F.89, E.96 Ligands: B28.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:M.25, A:A.47, A:A.69, A:F.89 Hydrogen bonds: A:D.26, A:G.27, A:N.28, A:N.28, A:G.29, A:R.39, A:H.43, A:H.43, A:F.70, A:S.72, A:S.72, A:S.72 Water bridges: A:R.30 B28.2: 8 residues within 4Å: Chain A: A.40, H.43, A.69, S.71, L.85, M.86, F.89 Ligands: B28.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.43, A:A.69, A:L.85, A:F.89 Hydrogen bonds: A:H.43 pi-Stacking: A:H.43 B28.3: 8 residues within 4Å: Chain B: D.26, G.27, N.28, G.29, R.39, H.43, F.70, S.71 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.27, B:N.28, B:N.28, B:G.29, B:H.43, B:F.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, R.T. et al., Bisphosphonates target multiple sites in both cis- and trans-prenyltransferases. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-06-12

Peptides

Undecaprenyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Undecaprenyl pyrophosphate synthetase

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