SMTL ID : 2ejc.1

Crystal Structure Of Pantoate--Beta-Alanine Ligase (panC) From Thermotoga maritima

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

44 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 2 residues within 4Å: Chain A: E.8, E.97 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.97, A:E.97, H2O.141 ZN.2: 2 residues within 4Å: Chain A: E.16, E.19 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.16, A:E.16, A:E.19 ZN.3: 1 residues within 4Å: Chain A: H.92 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.92, H2O.128 ZN.4: 2 residues within 4Å: Chain A: H.115, P.252 No protein-ligand interaction detected (PLIP) ZN.5: 2 residues within 4Å: Chain A: H.142, E.169 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.169, H2O.40 ZN.6: 2 residues within 4Å: Chain A: E.221, E.254 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.221, A:E.254, A:E.254 ZN.7: 2 residues within 4Å: Chain A: D.219, E.254 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.219 ZN.8: 3 residues within 4Å: Chain A: H.230, R.233 Ligands: ZN.21 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.230, H2O.161 ZN.9: 4 residues within 4Å: Chain A: C.117, D.240 Ligands: ZN.10, ZN.17 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.117, A:D.240, A:D.240, H2O.165 ZN.10: 3 residues within 4Å: Chain A: D.240 Ligands: ZN.9, ZN.17 No protein-ligand interaction detected (PLIP) ZN.11: 4 residues within 4Å: Chain A: H.37, K.149, S.186 Ligands: ZN.12 No protein-ligand interaction detected (PLIP) ZN.12: 2 residues within 4Å: Chain A: H.37 Ligands: ZN.11 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.37, H2O.97 ZN.13: 5 residues within 4Å: Chain A: Q.61, F.62, G.63, E.66, H.124 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Q.61, A:E.66, A:H.124, H2O.19 ZN.14: 2 residues within 4Å: Chain A: H.34, R.77 No protein-ligand interaction detected (PLIP) ZN.15: 3 residues within 4Å: Chain A: E.210, T.277 Ligands: ZN.16 No protein-ligand interaction detected (PLIP) ZN.16: 3 residues within 4Å: Chain A: K.207, E.210 Ligands: ZN.15 No protein-ligand interaction detected (PLIP) ZN.17: 4 residues within 4Å: Chain A: C.117 Ligands: ZN.9, ZN.10, ZN.18 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.117, H2O.173, H2O.177 ZN.18: 2 residues within 4Å: Chain A: C.117 Ligands: ZN.17 No protein-ligand interaction detected (PLIP) ZN.19: 1 residues within 4Å: Chain A: E.5 No protein-ligand interaction detected (PLIP) ZN.20: 2 residues within 4Å: Chain A: E.178, N.188 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.178 ZN.21: 3 residues within 4Å: Chain A: I.208, H.230 Ligands: ZN.8 No protein-ligand interaction detected (PLIP) ZN.22: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.24: 2 residues within 4Å: Chain B: E.8, E.97 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.97, B:E.97, H2O.340 ZN.25: 2 residues within 4Å: Chain B: E.16, E.19 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.16, B:E.16, B:E.19 ZN.26: 1 residues within 4Å: Chain B: H.92 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.92, H2O.327 ZN.27: 2 residues within 4Å: Chain B: H.115, P.252 No protein-ligand interaction detected (PLIP) ZN.28: 2 residues within 4Å: Chain B: H.142, E.169 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.169, H2O.239 ZN.29: 2 residues within 4Å: Chain B: E.221, E.254 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.221, B:E.254, B:E.254 ZN.30: 2 residues within 4Å: Chain B: D.219, E.254 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.219 ZN.31: 3 residues within 4Å: Chain B: H.230, R.233 Ligands: ZN.44 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.230, H2O.360 ZN.32: 4 residues within 4Å: Chain B: C.117, D.240 Ligands: ZN.33, ZN.40 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.117, B:D.240, B:D.240, H2O.364 ZN.33: 3 residues within 4Å: Chain B: D.240 Ligands: ZN.32, ZN.40 No protein-ligand interaction detected (PLIP) ZN.34: 4 residues within 4Å: Chain B: H.37, K.149, S.186 Ligands: ZN.35 No protein-ligand interaction detected (PLIP) ZN.35: 2 residues within 4Å: Chain B: H.37 Ligands: ZN.34 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.37, H2O.296 ZN.36: 5 residues within 4Å: Chain B: Q.61, F.62, G.63, E.66, H.124 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Q.61, B:E.66, B:H.124, H2O.218 ZN.37: 2 residues within 4Å: Chain B: H.34, R.77 No protein-ligand interaction detected (PLIP) ZN.38: 3 residues within 4Å: Chain B: E.210, T.277 Ligands: ZN.39 No protein-ligand interaction detected (PLIP) ZN.39: 3 residues within 4Å: Chain B: K.207, E.210 Ligands: ZN.38 No protein-ligand interaction detected (PLIP) ZN.40: 4 residues within 4Å: Chain B: C.117 Ligands: ZN.32, ZN.33, ZN.41 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:C.117, H2O.372, H2O.376 ZN.41: 2 residues within 4Å: Chain B: C.117 Ligands: ZN.40 No protein-ligand interaction detected (PLIP) ZN.42: 1 residues within 4Å: Chain B: E.5 No protein-ligand interaction detected (PLIP) ZN.43: 2 residues within 4Å: Chain B: E.178, N.188 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.178 ZN.44: 3 residues within 4Å: Chain B: I.208, H.230 Ligands: ZN.31 No protein-ligand interaction detected (PLIP) ZN.45: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.23: 1 residues within 4Å: Chain A: E.96 No protein-ligand interaction detected (PLIP) ACT.46: 1 residues within 4Å: Chain B: E.96 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B. et al., Crystal Structure Of Pantoate--Beta-Alanine Ligase (panC) From Thermotoga maritima. To be Published

Release Date

2008-03-18

Peptides

Pantoate--beta-alanine ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pantoate--beta-alanine ligase