SMTL ID : 2ek8.1 (1 other biounit)

Aminopeptidase from Aneurinibacillus sp. strain AM-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.240, E.273, Y.370, H.371 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.240, A:E.273, A:E.273, A:H.371, H2O.15 ZN.2: 7 residues within 4Å: Chain A: H.228, D.240, D.241, E.272, E.273, D.301 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.228, A:D.240, A:D.301, A:D.301, H2O.15 ZN.3: 4 residues within 4Å: Chain A: T.13, D.386, D.390 Ligands: ZN.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.386, A:D.390, H2O.13 ZN.4: 5 residues within 4Å: Chain A: T.10, T.13, D.386, D.390 Ligands: ZN.3 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.13, A:T.13, A:D.386, H2O.2, H2O.5, H2O.13 ZN.5: 1 residues within 4Å: Chain A: H.204 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.204, H2O.20 ZN.6: 1 residues within 4Å: Chain A: E.383 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.383, A:E.383

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.7: 7 residues within 4Å: Chain A: T.219, D.261, T.262, A.399, R.401, G.403, L.405 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.405 Hydrogen bonds: A:T.219, A:D.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akioka, M. et al., Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1. To be published

Release Date

2008-03-25

Peptides

Aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aminopeptidase

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