SMTL ID : 2en5.1 (1 other biounit)

Mutant R262H structure of PH0725 from Pyrococcus horikoshii OT3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: Y.117 Chain B: G.131 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.133, B:S.133, A:Y.117

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 19 residues within 4Å: Chain A: L.10, T.36, S.37, P.85, G.86, D.87, V.90, A.91, T.92, S.115, I.116, F.165, L.166, L.206, R.208, A.209, P.233, H.234, I.235 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.37, A:D.87, A:V.90, A:I.116, A:L.166, A:L.166, A:R.208, A:A.209, A:A.209 Water bridges: A:S.37, A:L.38, A:L.166

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: K.132 Chain B: Y.128, K.129, R.158, G.159 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.132, A:K.132, B:Y.128, B:G.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimizu, K. et al., Mutant R262H structure of PH0725 from Pyrococcus horikoshii OT3. To be Published

Release Date

2007-10-02

Peptides

diphthine synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

diphthine synthase

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