SMTL ID : 2f1t.1 (2 other biounits)

Outer membrane protein OmpW

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.1: 9 residues within 4Å: Chain A: F.31, I.65, V.76, L.123, L.126, L.128, A.163, Y.165, V.176 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.31, A:I.65, A:I.65, A:L.123, A:L.126, A:L.128, A:A.163, A:Y.165, A:V.176, A:V.176

5 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.2: 8 residues within 4Å: Chain A: A.10, G.11, L.41, A.57, A.58, F.185, A.187 Ligands: C8E.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.57 C8E.3: 4 residues within 4Å: Chain A: S.12, T.14, T.37 Ligands: C8E.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.37 C8E.4: 4 residues within 4Å: Chain A: F.96, Y.142, M.152 Ligands: C8E.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.142 C8E.5: 3 residues within 4Å: Chain A: Y.142, I.144 Ligands: C8E.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.142, A:Y.142, A:I.144 C8E.6: 6 residues within 4Å: Chain A: A.85, Q.86, A.102, G.103, I.104, A.134 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.102

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 7 residues within 4Å: Chain A: E.2, E.5, F.7, Y.88, D.141, L.143, R.190 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.2, A:E.5, A:D.141, A:R.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, H. et al., The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel. J.Biol.Chem. (2006)

Release Date

2006-01-24

Peptides

Outer membrane protein W: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Outer membrane protein W

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