SMTL ID : 2f8g.1

HIV-1 protease mutant I50V complexed with inhibitor TMC114

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain A: D.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.60, A:D.60 Water bridges: A:R.41

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 2 residues within 4Å: Chain A: P.1, Q.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.1 Hydrogen bonds: A:Q.2 ACY.6: 5 residues within 4Å: Chain B: P.39, G.40, R.41, Y.59, D.60 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:D.60 Hydrogen bonds: B:D.60

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.5: 25 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, V.50, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, V.50, P.81, I.84 22 PLIP interactions: 11 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:L.23, A:V.82, A:I.84, B:L.23, B:A.28, B:V.32, B:I.47, B:V.50, B:P.81, B:I.84 Hydrogen bonds: A:D.25, A:G.27, A:G.27, A:D.29, A:D.30, B:D.29, B:D.30, B:D.30 Water bridges: A:V.50, A:V.50 Salt bridges: A:D.25, B:D.25

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain B: W.42, K.55, R.57, V.77, G.78, P.79 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kovalevsky, A.Y. et al., Effectiveness of Nonpeptide Clinical Inhibitor TMC-114 on HIV-1 Protease with Highly Drug Resistant Mutations D30N, I50V, and L90M. J.Med.Chem. (2006)

Release Date

2006-03-07

Peptides

POL POLYPROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

POL POLYPROTEIN

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