SMTL ID : 2f95.1

M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-mer

Ligands

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 9 residues within 4Å: Chain A: G.31, R.34, Y.35, Y.36, R.151, I.155, A.211, L.212, L.218 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.35, A:Y.35, A:Y.36, A:A.211, A:L.212, A:L.218 Hydrogen bonds: A:R.34, A:R.34 Water bridges: A:R.151, A:L.218 Salt bridges: A:R.151 BOG.3: 9 residues within 4Å: Chain C: G.31, R.34, Y.35, Y.36, R.151, I.155, A.211, L.212, L.218 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:Y.35, C:Y.35, C:Y.36, C:A.211, C:L.212, C:L.218 Hydrogen bonds: C:R.34, C:R.34 Water bridges: C:R.151, C:L.218 Salt bridges: C:R.151

2 x RET: RETINAL(Covalent)

RET.2: 17 residues within 4Å: Chain A: W.75, T.78, T.79, V.107, M.108, G.111, F.126, G.129, A.130, F.133, W.170, Y.173, P.174, W.177, D.200, T.203, K.204 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.75, A:W.75, A:T.79, A:V.107, A:F.126, A:F.126, A:F.133, A:W.170, A:W.170, A:Y.173, A:Y.173, A:Y.173, A:Y.173, A:P.174, A:W.177, A:W.177, A:K.204 RET.4: 17 residues within 4Å: Chain C: W.75, T.78, T.79, V.107, M.108, G.111, F.126, G.129, A.130, F.133, W.170, Y.173, P.174, W.177, D.200, T.203, K.204 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:W.75, C:W.75, C:T.79, C:V.107, C:F.126, C:F.126, C:F.133, C:W.170, C:W.170, C:Y.173, C:Y.173, C:Y.173, C:Y.173, C:P.174, C:W.177, C:W.177, C:K.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moukhametzianov, R. et al., Development of the signal in sensory rhodopsin and its transfer to the cognate transducer. Nature (2006)

Release Date

2006-03-07

Peptides

Sensory rhodopsin II: AC
Sensory rhodopsin II transducer: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Membrane

We predict this structure to be a membrane protein.
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Sensory rhodopsin II

Sensory rhodopsin II transducer

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