SMTL ID : 2ffl.2 (4 other biounits)

Crystal Structure of Dicer from Giardia intestinalis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.33 Å

Oligo State

monomer

Ligands

9 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.651, D.655, D.722, E.725 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.651, A:D.722, A:E.725 MN.2: 3 residues within 4Å: Chain A: E.338, D.406, E.409 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.338, A:E.409, H2O.1 MN.3: 2 residues within 4Å: Chain A: D.655, E.686 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.655, A:E.686 MN.4: 3 residues within 4Å: Chain A: E.338, D.406, E.675 No protein-ligand interaction detected (PLIP) MN.5: 1 residues within 4Å: Chain A: H.94 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.94 MN.6: 2 residues within 4Å: Chain A: E.493, D.497 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.493, A:D.497 MN.7: 2 residues within 4Å: Chain A: N.204, H.206 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.206 MN.8: 3 residues within 4Å: Chain A: R.374, N.375, E.376 No protein-ligand interaction detected (PLIP) MN.9: 2 residues within 4Å: Chain A: D.342, K.659 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.342, A:D.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MacRae, I.J. et al., Structural Basis of Double-Stranded RNA Processing by Dicer. Science (2006)

Release Date

2006-01-24

Peptides

Dicer: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dicer

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