- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x SFD: (S)-10-((2S,3S,4R)-5-((S)-((S)-(((2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDROFURAN-2-YL)METHOXY)(HYDROXY)PHOSPHORYLOXY)(HYDROXY)PHOSPHORYLOXY)-2,3,4-TRIHYDROXYPENTYL)-7,8-DIMETHYL-2,4-DIOXO-2,3,4,4A-TETRAHYDROBENZO[G]PTERIDINE-5(10H)-SULFONIC ACID(Non-covalent)
- 3 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.2: 13 residues within 4Å:- Chain A: N.74, Y.95, Q.145, R.265, V.273, G.274, L.278, P.311, H.398, H.446, F.448
- Ligands: SFD.1, AMP.3
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:Y.95, A:Q.145, A:V.273, A:G.274
- Water bridges: A:Y.95, A:R.265, A:R.265, A:R.265, A:R.265, A:R.265, A:S.399, A:H.446
- Salt bridges: A:R.265
AMP.3: 10 residues within 4Å:- Chain A: F.264, F.277, C.282, A.284, Y.292, I.293, R.317, N.318, V.321
- Ligands: AMP.2
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:A.284, A:N.318
- Water bridges: A:F.264, A:C.282, A:A.284, A:A.284, A:E.291, A:Q.310, A:N.318
- Salt bridges: A:R.317
- pi-Stacking: A:F.277
AMP.6: 15 residues within 4Å:- Chain B: N.74, Y.95, Q.145, R.265, V.273, G.274, F.277, L.278, P.311, R.317, H.398, H.446, F.448
- Ligands: NA.4, SFD.5
17 PLIP interactions:17 interactions with chain B- Hydrogen bonds: B:Y.95, B:V.273, B:G.274, B:R.317
- Water bridges: B:R.265, B:R.265, B:R.265, B:R.265, B:R.265, B:R.317, B:S.399, B:H.446, B:H.446
- Salt bridges: B:R.265, B:H.398
- pi-Cation interactions: B:R.317, B:R.317
- 1 x NA: SODIUM ION(Non-functional Binders)
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.7: 13 residues within 4Å:- Chain C: S.3, C.25, P.26, L.29, M.30, N.41, C.47, W.48, E.49, C.50, Y.51, S.52, C.53
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.25, C:C.47, C:C.50, C:C.53
SF4.8: 12 residues within 4Å:- Chain C: V.5, C.10, D.11, G.12, C.13, T.19, A.20, C.21, A.39, C.57, Q.59, I.62
5 PLIP interactions:5 interactions with chain C,- Salt bridges: C:D.11
- Metal complexes: C:C.10, C:C.13, C:C.21, C:C.57
SF4.9: 13 residues within 4Å:- Chain D: S.3, C.25, P.26, L.29, M.30, N.41, C.47, W.48, E.49, C.50, Y.51, S.52, C.53
4 PLIP interactions:4 interactions with chain D,- Metal complexes: D:C.25, D:C.47, D:C.50, D:C.53
SF4.10: 13 residues within 4Å:- Chain D: V.5, C.10, D.11, G.12, C.13, T.19, A.20, C.21, L.32, A.39, C.57, Q.59, I.62
5 PLIP interactions:5 interactions with chain D,- Salt bridges: D:D.11
- Metal complexes: D:C.10, D:C.13, D:C.21, D:C.57
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schiffer, A. et al., Reaction mechanism of the iron-sulfur flavoenzyme adenosine-5'-phosphosulfate reductase based on the structural characterization of different enzymatic states. Biochemistry (2006)
- Release Date
- 2006-03-28
- Peptides
- adenylylsulfate reductase, subunit A: AB
adenylylsulfate reductase, subunit B: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
BD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x SFD: (S)-10-((2S,3S,4R)-5-((S)-((S)-(((2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDROFURAN-2-YL)METHOXY)(HYDROXY)PHOSPHORYLOXY)(HYDROXY)PHOSPHORYLOXY)-2,3,4-TRIHYDROXYPENTYL)-7,8-DIMETHYL-2,4-DIOXO-2,3,4,4A-TETRAHYDROBENZO[G]PTERIDINE-5(10H)-SULFONIC ACID(Non-covalent)
- 3 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schiffer, A. et al., Reaction mechanism of the iron-sulfur flavoenzyme adenosine-5'-phosphosulfate reductase based on the structural characterization of different enzymatic states. Biochemistry (2006)
- Release Date
- 2006-03-28
- Peptides
- adenylylsulfate reductase, subunit A: AB
adenylylsulfate reductase, subunit B: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
BD
D