SMTL ID : 2fmb.1

EIAV PROTEASE COMPLEXED WITH AN INHIBITOR LP-130

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x LP1: 4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE(Non-covalent)

LP1.1: 24 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, T.30, I.53, G.54, G.55, P.86, I.89 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, I.53, G.54, G.55, V.56, P.86, V.87, I.89 Ligands: LP1.2 23 PLIP interactions: 10 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:P.86, A:I.89, B:L.23, B:A.28, B:I.53, B:V.56, B:P.86, B:V.87, B:V.87, B:I.89 Hydrogen bonds: A:G.27, A:D.29, A:D.29, A:D.29, A:G.54, A:G.54, B:G.27, B:D.29, B:D.29, B:G.54, B:G.54 Water bridges: A:V.56, A:V.56 LP1.2: 24 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, I.53, G.54, G.55, V.56, P.86, V.87, I.89 Chain B: D.25, G.27, A.28, D.29, T.30, I.53, G.54, G.55, P.86, I.89 Ligands: LP1.1 23 PLIP interactions: 14 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:I.53, A:V.56, A:P.86, A:V.87, A:V.87, A:I.89, B:P.86, B:I.89 Hydrogen bonds: A:G.27, A:D.29, A:D.29, A:D.29, A:G.54, A:G.54, B:G.27, B:D.29, B:D.29, B:G.54, B:G.54 Water bridges: B:V.56, B:V.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kervinen, J. et al., Toward a universal inhibitor of retroviral proteases: comparative analysis of the interactions of LP-130 complexed with proteases from HIV-1, FIV, and EIAV. Protein Sci. (1998)

Release Date

1999-01-13

Peptides

EQUINE INFECTIOUS ANEMIA VIRUS PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

EQUINE INFECTIOUS ANEMIA VIRUS PROTEASE

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