SMTL ID : 2fu9.2 (1 other biounit)

Zinc-beta-lactamase L1 from stenotrophomonas maltophilia (mp2 inhibitor complex)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.84, H.86, H.160 Ligands: ZN.2, MP2.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.84, A:H.86, A:H.160 ZN.2: 5 residues within 4Å: Chain A: D.88, H.89, H.225 Ligands: ZN.1, MP2.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.88, A:D.88, A:H.89, A:H.225, H2O.7

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.137, V.144, I.145, T.146 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.146, A:T.146 Water bridges: A:R.137, A:R.137, A:T.146 Salt bridges: A:R.137 SO4.4: 2 residues within 4Å: Chain A: N.174, G.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.175 Water bridges: A:N.174

1 x MP2: N-[(BENZYLOXY)CARBONYL]-L-CYSTEINYLGLYCINE(Non-covalent)

MP2.5: 15 residues within 4Å: Chain A: Y.11, W.17, H.84, H.86, D.88, H.89, F.124, G.127, I.128, H.160, S.187, P.189, H.225 Ligands: ZN.1, ZN.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.124, A:I.128 Hydrogen bonds: A:Y.11, A:Y.11, A:S.187 Salt bridges: A:H.225

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: F.210, A.211, R.214, A.250, D.251, E.254 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.250, A:E.254 Water bridges: A:A.211, A:D.251 GOL.7: 2 residues within 4Å: Chain A: R.116, D.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.120 Water bridges: A:R.116 GOL.8: 3 residues within 4Å: Chain A: P.132, A.133, N.134 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nauton, L. et al., Structural insights into the design of inhibitors for the L1 metallo-beta-lactamase from Stenotrophomonas maltophilia. J.Mol.Biol. (2008)

Release Date

2007-01-30

Peptides

Metallo-beta-lactamase L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Metallo-beta-lactamase L1

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