SMTL ID : 2g37.1

Structure of Thermus thermophilus L-proline dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 23 residues within 4Å: Chain A: D.153, M.154, V.181, Q.183, R.204, V.206, K.207, G.208, A.209, Y.210, K.221, A.245, T.246, H.247, D.248, P.249, Q.272, F.273, L.274, V.277, R.278, Y.295, R.313 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:A.245, A:Q.272, A:L.274, A:L.274, A:Y.295 Hydrogen bonds: A:M.154, A:M.154, A:Q.183, A:R.204, A:G.208, A:G.208, A:A.209, A:H.247, A:H.247, A:R.313 Water bridges: A:K.207, A:R.278, A:R.278 Salt bridges: A:K.207, A:K.207, A:K.221, A:H.247 pi-Cation interactions: A:R.313 FAD.4: 21 residues within 4Å: Chain B: D.153, M.154, V.181, Q.183, R.204, V.206, K.207, G.208, A.209, Y.210, A.245, T.246, H.247, D.248, P.249, Q.272, F.273, L.274, V.277, R.278, Y.295 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:A.245, B:Q.272, B:L.274, B:L.274, B:Y.295, B:Y.295 Hydrogen bonds: B:M.154, B:M.154, B:Q.183, B:R.204, B:K.207, B:G.208, B:G.208, B:A.209, B:T.246, B:H.247, B:D.248 Water bridges: B:R.278 Salt bridges: B:K.207, B:K.207, B:H.247 pi-Cation interactions: B:H.247

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 8 residues within 4Å: Chain A: K.114, Y.115, F.149, R.151, N.202, Y.241, E.270, R.293 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.115, A:Y.115 Hydrogen bonds: A:N.202 MPD.3: 4 residues within 4Å: Chain A: R.171, E.172, P.198, Y.199 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.172, A:P.198, A:Y.199, A:Y.199 MPD.5: 8 residues within 4Å: Chain B: K.114, Y.115, F.149, R.151, N.202, Y.241, E.270, R.293 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.115 Hydrogen bonds: B:N.202 MPD.6: 4 residues within 4Å: Chain B: R.171, E.172, P.198, Y.199 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.172, B:Y.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

White, T.A. et al., Structure and Kinetics of Monofunctional Proline Dehydrogenase from Thermus thermophilus. J.Biol.Chem. (2007)

Release Date

2007-02-27

Peptides

proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase

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