SMTL ID : 2g4z.1

anomalous substructure of thermolysin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166 Ligands: CL.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.57, A:Q.61, H2O.2, H2O.2, H2O.3 CA.3: 5 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:E.177, A:D.185, A:E.187, A:E.190 CA.4: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.193, A:I.197, A:D.200, H2O.1, H2O.1

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: G.12, V.13, L.14, G.15, D.16, K.18 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166, H.231 Ligands: ZN.1 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: Y.75, Y.76, A.180 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: D.226 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: R.285, V.289, K.307 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: G.259, R.260, D.261 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: Q.246, R.260 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: Y.211, G.212 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.13: 3 residues within 4Å: Chain A: G.3, T.4, S.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.3, A:T.4, A:S.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller-Dieckmann, C. et al., On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths. Acta Crystallogr.,Sect.D (2007)

Release Date

2007-02-20

Peptides

Thermolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermolysin

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