SMTL ID : 2g8s.1 (1 other biounit)

Crystal structure of the soluble Aldose sugar dehydrogenase (Asd) from Escherichia coli in the apo-form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: E.223, Y.233 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.223, A:Y.233, H2O.1, H2O.1, H2O.2

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: T.117, V.118, F.119, R.120 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.117 Water bridges: A:R.120, A:R.120 Salt bridges: A:R.120

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 10 residues within 4Å: Chain A: R.197, E.215, H.216, G.217, P.218, G.221, E.223, W.235, A.238, T.239 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.197, A:E.215, A:T.239, A:W.240 Water bridges: A:N.225 EDO.4: 7 residues within 4Å: Chain A: W.21, R.134, Q.200, S.274, G.275, R.326, D.327 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.21, A:R.134, A:R.134, A:G.275, A:R.326 EDO.5: 6 residues within 4Å: Chain A: W.207, Q.289, V.306, N.307, G.308 Ligands: EDO.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.306, A:G.308 EDO.6: 6 residues within 4Å: Chain A: K.16, L.17, D.18, L.36, R.42, L.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.18 Water bridges: A:R.42 EDO.7: 3 residues within 4Å: Chain A: V.10, V.12, R.321 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.321 Water bridges: A:V.10 EDO.8: 5 residues within 4Å: Chain A: P.27, H.30, F.77, R.81, L.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.81, A:R.81 EDO.9: 6 residues within 4Å: Chain A: A.74, P.75, D.76, R.82, D.171, Q.172 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.76, A:R.82 Water bridges: A:D.76, A:S.80 EDO.10: 5 residues within 4Å: Chain A: L.13, A.46, Y.337, K.349 Ligands: EDO.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.337, A:Y.337 Water bridges: A:E.11 EDO.11: 5 residues within 4Å: Chain A: F.25, G.31, P.332, Y.337 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.29 EDO.12: 6 residues within 4Å: Chain A: R.219, G.220, W.240, G.241, I.242, K.268 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.240 EDO.13: 5 residues within 4Å: Chain A: V.303, D.314, G.315, R.316, I.317 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.7, A:T.7, A:T.7, A:D.314 EDO.14: 3 residues within 4Å: Chain A: W.207, Q.289 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.207, A:Q.289 EDO.15: 4 residues within 4Å: Chain A: H.19, R.37, G.38, A.62 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.19 Water bridges: A:R.37, A:R.37, A:R.37, A:G.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Southall, S.M. et al., Soluble Aldose Sugar Dehydrogenase from Escherichia coli: A HIGHLY EXPOSED ACTIVE SITE CONFERRING BROAD SUBSTRATE SPECIFICITY. J.Biol.Chem. (2006)

Release Date

2006-08-08

Peptides

Glucose/sorbosone dehydrogenases: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose/sorbosone dehydrogenases

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