SMTL ID : 2g9g.1 (1 other biounit)

Crystal structure of His-tagged mouse PNGase C-terminal domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.149, K.151, N.160 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.149, A:K.151 SO4.2: 5 residues within 4Å: Chain A: K.97, V.98, E.99, K.100, D.101 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.98, A:K.100, A:D.101, A:D.101 Salt bridges: A:K.97 SO4.3: 4 residues within 4Å: Chain A: S.147, R.149, S.186, R.187 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.147, A:S.186 Water bridges: A:S.186, A:S.186 Salt bridges: A:R.149, A:R.187

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: W.89, K.121, R.153, T.180 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.153, A:T.180, A:T.180 Water bridges: A:K.121 GOL.5: 2 residues within 4Å: Chain A: F.143, R.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, X. et al., Structural and biochemical studies of the C-terminal domain of mouse peptide-N-glycanase identify it as a mannose-binding module. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-10-24

Peptides

peptide N-glycanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

peptide N-glycanase

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