SMTL ID : 2ga6.2 (1 other biounit)

The crystal structure of SARS nsp10 without zinc ion as additive

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-12-mer

Ligands

24 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.74, Y.76, C.77, H.83, C.90 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.74, A:C.77, A:H.83, A:H.83, A:C.90 ZN.2: 4 residues within 4Å: Chain A: C.117, C.120, C.128, S.129 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.117, A:C.120, A:C.128, H2O.1, H2O.3 ZN.3: 5 residues within 4Å: Chain B: C.74, C.77, H.83, F.89, C.90 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.74, B:C.77, B:H.83, B:C.90 ZN.4: 4 residues within 4Å: Chain B: C.117, C.120, C.128, S.129 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.117, B:C.120, B:C.128, H2O.4 ZN.5: 5 residues within 4Å: Chain C: C.74, C.77, H.83, F.89, C.90 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.74, C:C.77, C:H.83, C:C.90 ZN.6: 4 residues within 4Å: Chain C: C.117, C.120, C.128, S.129 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.117, C:C.120, C:C.128, H2O.6 ZN.7: 5 residues within 4Å: Chain D: C.74, Y.76, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.74, D:C.77, D:H.83, D:C.90 ZN.8: 4 residues within 4Å: Chain D: C.117, C.120, C.128, S.129 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.117, D:C.120, D:C.128, H2O.8 ZN.9: 4 residues within 4Å: Chain E: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.74, E:C.77, E:H.83, E:C.90 ZN.10: 4 residues within 4Å: Chain E: C.117, C.120, C.128, S.129 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:C.117, E:C.120, E:C.128, H2O.9 ZN.11: 4 residues within 4Å: Chain F: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.74, F:C.77, F:H.83, F:C.90 ZN.12: 4 residues within 4Å: Chain F: C.117, C.120, C.128, S.129 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:C.117, F:C.120, F:C.128, H2O.11 ZN.13: 5 residues within 4Å: Chain G: C.74, C.77, H.83, C.90, D.91 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:C.74, G:C.77, G:H.83, G:C.90, H2O.11 ZN.14: 4 residues within 4Å: Chain G: C.117, C.120, C.128, S.129 4 PLIP interactions: 3 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:C.117, G:C.120, G:C.128, H2O.12 ZN.15: 5 residues within 4Å: Chain H: C.74, C.77, H.83, F.89, C.90 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.74, H:C.77, H:H.83, H:C.90 ZN.16: 4 residues within 4Å: Chain H: C.117, C.120, C.128, S.129 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:C.117, H:C.120, H:C.128, H2O.13 ZN.17: 5 residues within 4Å: Chain I: C.74, Y.76, C.77, H.83, C.90 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:C.74, I:C.77, I:H.83, I:H.83, I:C.90 ZN.18: 4 residues within 4Å: Chain I: C.117, C.120, C.128, S.129 4 PLIP interactions: 3 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:C.117, I:C.120, I:C.128, H2O.14 ZN.19: 5 residues within 4Å: Chain J: C.74, C.77, H.83, F.89, C.90 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.74, J:C.77, J:H.83, J:C.90 ZN.20: 4 residues within 4Å: Chain J: C.117, C.120, C.128, S.129 4 PLIP interactions: 3 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:C.117, J:C.120, J:C.128, H2O.16 ZN.21: 5 residues within 4Å: Chain K: C.74, Y.76, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.74, K:C.77, K:H.83, K:C.90 ZN.22: 4 residues within 4Å: Chain K: C.117, C.120, C.128, S.129 4 PLIP interactions: 3 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:C.117, K:C.120, K:C.128, H2O.17 ZN.23: 5 residues within 4Å: Chain L: C.74, Y.76, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.74, L:C.77, L:H.83, L:C.90 ZN.24: 4 residues within 4Å: Chain L: C.117, C.120, C.128, S.129 3 PLIP interactions: 2 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:C.117, L:C.128, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, D. et al., Dodecamer Structure of Severe Acute Respiratory Syndrome Coronavirus Nonstructural Protein nsp10. J.Virol. (2006)

Release Date

2006-08-15

Peptides

orf1a polyprotein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

C
O

D
P

E
Q

F
R

G
S

H
T

I
U

J
V

K
W

L
X

orf1a polyprotein

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