SMTL ID : 2gdz.1

Crystal structure of 15-hydroxyprostaglandin dehydrogenase type1, complexed with NAD+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 29 residues within 4Å: Chain A: G.14, A.16, Q.17, G.18, I.19, D.38, W.39, N.40, C.65, D.66, V.67, N.93, A.94, G.95, V.96, I.108, M.138, S.139, S.140, Y.153, K.157, P.185, G.186, F.187, V.188, T.190, A.191, I.192, L.193 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:P.185 Hydrogen bonds: A:G.14, A:Q.17, A:Q.17, A:I.19, A:W.39, A:D.66, A:V.67, A:N.93, A:Y.153, A:K.157, A:V.188, A:V.188, A:T.190, A:T.190, A:A.191, A:I.192 Water bridges: A:Q.17, A:G.20, A:N.93 pi-Stacking: A:W.39, A:W.39 NAD.2: 29 residues within 4Å: Chain B: G.14, A.16, Q.17, G.18, I.19, D.38, W.39, N.40, C.65, D.66, V.67, N.93, A.94, G.95, V.96, I.108, M.138, S.139, S.140, Y.153, K.157, P.185, G.186, F.187, V.188, T.190, A.191, I.192, L.193 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:P.185 Hydrogen bonds: B:G.14, B:Q.17, B:Q.17, B:I.19, B:W.39, B:D.66, B:D.66, B:V.67, B:N.93, B:K.157, B:V.188, B:V.188, B:T.190, B:A.191, B:I.192 Water bridges: B:Q.17, B:G.20, B:N.93 pi-Stacking: B:W.39, B:W.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niesen, F.H. et al., High-Affinity Inhibitors of Human NAD-Dependent 15-Hydroxyprostaglandin Dehydrogenase: Mechanisms of Inhibition and Structure-Activity Relationships. Plos One (2010)

Release Date

2006-04-04

Peptides

NAD+-dependent 15-hydroxyprostaglandin dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NAD+-dependent 15-hydroxyprostaglandin dehydrogenase