SMTL ID : 2gmv.1 (1 other biounit)

PEPCK complex with a GTP-competitive inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: K.247, H.267, D.314 Ligands: PEP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.267, A:D.314

1 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)

PEP.2: 11 residues within 4Å: Chain A: A.89, R.90, Y.238, G.239, G.240, K.247, F.336, N.406, R.408, F.488 Ligands: MN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.336 Hydrogen bonds: A:R.90, A:G.240, A:N.406 Water bridges: A:R.408, A:R.408 Salt bridges: A:R.90, A:K.247, A:R.408, A:R.408

1 x UN8: N-(4-{[3-BUTYL-1-(2-FLUOROBENZYL)-2,6-DIOXO-2,3,6,7-TETRAHYDRO-1H-PURIN-8-YL]METHYL}PHENYL)-1-METHYL-1H-IMIDAZOLE-4-SULFONAMIDE(Non-covalent)

UN8.3: 17 residues within 4Å: Chain A: A.290, C.291, G.292, N.295, L.296, M.299, K.345, T.346, R.439, W.519, F.520, F.528, W.530, P.531, G.532, F.533, N.536 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.295, A:M.299, A:F.528, A:F.533 Hydrogen bonds: A:N.295, A:F.533, A:N.536 pi-Stacking: A:F.533, A:F.533, A:F.533, A:F.533

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pietranico, S.L. et al., C-8 Modifications of 3-alkyl-1,8-dibenzylxanthines as inhibitors of human cytosolic phosphoenolpyruvate carboxykinase. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-05-29

Peptides

Phosphoenolpyruvate carboxykinase, cytosolic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoenolpyruvate carboxykinase, cytosolic

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