SMTL ID : 2gv9.2 (1 other biounit)

Crystal structure of the Herpes Simplex virus type 1 DNA polymerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.458, Q.468, K.469, R.470 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.470 Salt bridges: A:R.458, A:R.470 SO4.2: 3 residues within 4Å: Chain A: R.743, R.747, K.769 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.743, A:R.747, A:K.769

1 x HG: MERCURY (II) ION(Non-covalent)

HG.3: 2 residues within 4Å: Chain A: C.29, E.31 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.29

1 x GAI: GUANIDINE(Non-covalent)

GAI.4: 5 residues within 4Å: Chain A: G.343, P.345, D.439, I.440, K.442 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.343, A:D.439, A:K.442 Salt bridges: A:D.439

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Crystal structure of the herpes simplex virus 1 DNA polymerase. J.Biol.Chem. (2006)

Release Date

2006-05-16

Peptides

DNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA polymerase

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