SMTL ID : 2h94.1

Crystal Structure and Mechanism of human Lysine-Specific Demethylase-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

3 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 3 residues within 4Å: Chain A: C.189, L.191, W.360 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.189 HG.2: 1 residues within 4Å: Chain A: Q.248 No protein-ligand interaction detected (PLIP) HG.3: 1 residues within 4Å: Chain A: C.402 No protein-ligand interaction detected (PLIP)

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 35 residues within 4Å: Chain A: I.113, G.114, S.115, G.116, V.117, S.118, L.136, E.137, A.138, R.139, G.143, G.144, R.145, L.158, G.159, A.160, M.161, V.162, A.418, V.419, T.453, L.454, P.455, V.466, L.488, W.580, W.585, S.589, Y.590, G.629, E.630, A.638, T.639, V.640, A.643 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:L.488, A:W.580, A:Y.590 Hydrogen bonds: A:S.115, A:S.118, A:S.118, A:G.119, A:A.138, A:R.139, A:R.139, A:G.143, A:R.145, A:A.160, A:M.161, A:V.162, A:V.162, A:V.419, A:V.419, A:E.630, A:V.640 Water bridges: A:G.144, A:R.145, A:R.145, A:V.146, A:V.146, A:K.490, A:K.490 Salt bridges: A:R.145, A:R.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stavropoulos, P. et al., Crystal structure and mechanism of human lysine-specific demethylase-1. Nat.Struct.Mol.Biol. (2006)

Release Date

2006-07-04

Peptides

Lysine-specific histone demethylase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific histone demethylase 1