SMTL ID : 2h9u.1

Crystal structure of the archaea specific DNA binding protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.42, N.45, R.46 Chain B: N.45 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.45, A:R.42 EDO.2: 4 residues within 4Å: Chain A: M.17, V.20, L.21, R.57 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.21, A:R.57 Water bridges: A:R.57 EDO.3: 2 residues within 4Å: Chain A: T.26, E.29 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.29 EDO.4: 3 residues within 4Å: Chain A: P.15, V.16, R.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.16, A:R.46 Water bridges: A:M.17 EDO.5: 3 residues within 4Å: Chain A: L.21, R.57 Ligands: EDO.6 No protein-ligand interaction detected (PLIP) EDO.6: 2 residues within 4Å: Chain A: R.57 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.57 EDO.7: 4 residues within 4Å: Chain A: N.45 Chain B: R.42, N.45, R.46 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.45, B:R.42 EDO.8: 4 residues within 4Å: Chain B: M.17, V.20, L.21, R.57 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.21, B:R.57 Water bridges: B:R.57 EDO.9: 2 residues within 4Å: Chain B: T.26, E.29 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.29 EDO.10: 3 residues within 4Å: Chain B: P.15, V.16, R.46 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.16, B:R.46 Water bridges: B:M.17 EDO.11: 3 residues within 4Å: Chain B: L.21, R.57 Ligands: EDO.12 No protein-ligand interaction detected (PLIP) EDO.12: 2 residues within 4Å: Chain B: R.57 Ligands: EDO.11 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumarevel, T.S. et al., Crystal structure of the archaea specific DNA binding protein from Aeropyrum pernix K1. To be Published

Release Date

2007-06-12

Peptides

DNA/RNA-binding protein Alba 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DNA/RNA-binding protein Alba 2

Related Entries With Identical Sequence