SMTL ID : 2hai.1

Crystal structure of HCV NS5B RNA polymerase in complex with novel class of dihydropyrone-containing inhibitor.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x PFI: (6S)-6-CYCLOPENTYL-6-[2-(3-FLUORO-4-ISOPROPOXYPHENYL)ETHYL]-4-HYDROXY-5,6-DIHYDRO-2H-PYRAN-2-ONE(Non-covalent)

PFI.1: 11 residues within 4Å: Chain A: L.419, R.422, M.423, H.475, S.476, Y.477, I.482, A.486, L.497, R.501, W.528 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.419, A:L.419, A:R.422, A:M.423, A:Y.477, A:W.528, A:W.528, A:W.528, A:W.528 Hydrogen bonds: A:S.476 Water bridges: A:Y.477, A:L.497, A:K.533 Salt bridges: A:R.501

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Identification and structure-based optimization of novel dihydropyrones as potent HCV RNA polymerase inhibitors. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-09-05

Peptides

HEPATITIS C VIRUS NS5B RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HEPATITIS C VIRUS NS5B RNA POLYMERASE

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