SMTL ID : 2hb6.1

Structure of Caenorhabditis elegans leucine aminopeptidase (LAP1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: K.252, D.334, A.335, E.336, G.337, R.338, L.363 Ligands: NA.4, NA.5 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: K.98, R.467 Chain C: S.417 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: S.139, G.140, R.142 Ligands: NA.6 Ligand excluded by PLIP SO4.14: 9 residues within 4Å: Chain B: K.252, D.334, A.335, E.336, G.337, R.338, L.363 Ligands: NA.17, NA.18 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain B: S.139, G.140, R.142 Ligands: NA.19 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain B: K.98, R.467 Chain F: S.417 Ligand excluded by PLIP SO4.25: 9 residues within 4Å: Chain C: K.252, D.334, A.335, E.336, G.337, R.338, L.363 Ligands: NA.28, NA.29 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain C: K.98, R.467 Chain E: S.417 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain C: S.139, G.140, R.142 Ligands: NA.30 Ligand excluded by PLIP SO4.38: 9 residues within 4Å: Chain D: K.252, D.334, A.335, E.336, G.337, R.338, L.363 Ligands: NA.41, NA.42 Ligand excluded by PLIP SO4.39: 4 residues within 4Å: Chain D: S.139, G.140, R.142 Ligands: NA.43 Ligand excluded by PLIP SO4.40: 3 residues within 4Å: Chain B: S.417 Chain D: K.98, R.467 Ligand excluded by PLIP SO4.49: 9 residues within 4Å: Chain E: K.252, D.334, A.335, E.336, G.337, R.338, L.363 Ligands: NA.52, NA.53 Ligand excluded by PLIP SO4.50: 3 residues within 4Å: Chain A: S.417 Chain E: K.98, R.467 Ligand excluded by PLIP SO4.51: 4 residues within 4Å: Chain E: S.139, G.140, R.142 Ligands: NA.54 Ligand excluded by PLIP SO4.62: 9 residues within 4Å: Chain F: K.252, D.334, A.335, E.336, G.337, R.338, L.363 Ligands: NA.65, NA.66 Ligand excluded by PLIP SO4.63: 4 residues within 4Å: Chain F: S.139, G.140, R.142 Ligands: NA.67 Ligand excluded by PLIP SO4.64: 3 residues within 4Å: Chain D: S.417 Chain F: K.98, R.467 Ligand excluded by PLIP

18 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: K.252, D.257, D.275, E.336 Ligands: SO4.1, NA.5 Ligand excluded by PLIP NA.5: 5 residues within 4Å: Chain A: D.257, D.334, E.336 Ligands: SO4.1, NA.4 Ligand excluded by PLIP NA.6: 2 residues within 4Å: Chain A: G.140 Ligands: SO4.3 Ligand excluded by PLIP NA.17: 6 residues within 4Å: Chain B: K.252, D.257, D.275, E.336 Ligands: SO4.14, NA.18 Ligand excluded by PLIP NA.18: 5 residues within 4Å: Chain B: D.257, D.334, E.336 Ligands: SO4.14, NA.17 Ligand excluded by PLIP NA.19: 2 residues within 4Å: Chain B: G.140 Ligands: SO4.15 Ligand excluded by PLIP NA.28: 6 residues within 4Å: Chain C: K.252, D.257, D.275, E.336 Ligands: SO4.25, NA.29 Ligand excluded by PLIP NA.29: 5 residues within 4Å: Chain C: D.257, D.334, E.336 Ligands: SO4.25, NA.28 Ligand excluded by PLIP NA.30: 2 residues within 4Å: Chain C: G.140 Ligands: SO4.27 Ligand excluded by PLIP NA.41: 6 residues within 4Å: Chain D: K.252, D.257, D.275, E.336 Ligands: SO4.38, NA.42 Ligand excluded by PLIP NA.42: 5 residues within 4Å: Chain D: D.257, D.334, E.336 Ligands: SO4.38, NA.41 Ligand excluded by PLIP NA.43: 2 residues within 4Å: Chain D: G.140 Ligands: SO4.39 Ligand excluded by PLIP NA.52: 6 residues within 4Å: Chain E: K.252, D.257, D.275, E.336 Ligands: SO4.49, NA.53 Ligand excluded by PLIP NA.53: 5 residues within 4Å: Chain E: D.257, D.334, E.336 Ligands: SO4.49, NA.52 Ligand excluded by PLIP NA.54: 2 residues within 4Å: Chain E: G.140 Ligands: SO4.51 Ligand excluded by PLIP NA.65: 6 residues within 4Å: Chain F: K.252, D.257, D.275, E.336 Ligands: SO4.62, NA.66 Ligand excluded by PLIP NA.66: 5 residues within 4Å: Chain F: D.257, D.334, E.336 Ligands: SO4.62, NA.65 Ligand excluded by PLIP NA.67: 2 residues within 4Å: Chain F: G.140 Ligands: SO4.63 Ligand excluded by PLIP

36 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 7 residues within 4Å: Chain A: V.28, F.114, A.115, E.116, V.151, C.152, D.153 Ligand excluded by PLIP GOL.8: 3 residues within 4Å: Chain A: E.35, G.36, K.39 Ligand excluded by PLIP GOL.9: 5 residues within 4Å: Chain A: K.326, F.411, M.421, A.443, F.447 Ligand excluded by PLIP GOL.10: 4 residues within 4Å: Chain A: Y.117, P.118, M.488, K.490 Ligand excluded by PLIP GOL.11: 4 residues within 4Å: Chain A: S.324, G.325, K.326 Chain E: T.138 Ligand excluded by PLIP GOL.12: 4 residues within 4Å: Chain A: T.2, Q.3, K.133, R.175 Ligand excluded by PLIP GOL.13: 8 residues within 4Å: Chain A: E.245, I.247, T.356, E.388, R.452, L.480, K.482, Y.483 Ligand excluded by PLIP GOL.20: 5 residues within 4Å: Chain B: R.64, P.66, H.73 Chain E: P.66, H.73 Ligand excluded by PLIP GOL.21: 3 residues within 4Å: Chain B: E.35, G.36, K.39 Ligand excluded by PLIP GOL.22: 5 residues within 4Å: Chain B: K.326, F.411, M.421, A.443, F.447 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain B: T.2, Q.3, K.133, E.172, R.175 Ligand excluded by PLIP GOL.24: 9 residues within 4Å: Chain B: E.245, I.247, T.356, F.358, E.388, R.452, L.480, K.482, Y.483 Ligand excluded by PLIP GOL.31: 7 residues within 4Å: Chain C: V.28, F.114, A.115, E.116, V.151, C.152, D.153 Ligand excluded by PLIP GOL.32: 3 residues within 4Å: Chain C: E.35, G.36, K.39 Ligand excluded by PLIP GOL.33: 5 residues within 4Å: Chain C: K.326, F.411, M.421, A.443, F.447 Ligand excluded by PLIP GOL.34: 4 residues within 4Å: Chain C: Y.117, P.118, M.488, K.490 Ligand excluded by PLIP GOL.35: 4 residues within 4Å: Chain A: T.138 Chain C: S.324, G.325, K.326 Ligand excluded by PLIP GOL.36: 4 residues within 4Å: Chain C: T.2, Q.3, K.133, R.175 Ligand excluded by PLIP GOL.37: 8 residues within 4Å: Chain C: E.245, I.247, T.356, E.388, R.452, L.480, K.482, Y.483 Ligand excluded by PLIP GOL.44: 5 residues within 4Å: Chain A: P.66, H.73 Chain D: R.64, P.66, H.73 Ligand excluded by PLIP GOL.45: 3 residues within 4Å: Chain D: E.35, G.36, K.39 Ligand excluded by PLIP GOL.46: 5 residues within 4Å: Chain D: K.326, F.411, M.421, A.443, F.447 Ligand excluded by PLIP GOL.47: 5 residues within 4Å: Chain D: T.2, Q.3, K.133, E.172, R.175 Ligand excluded by PLIP GOL.48: 9 residues within 4Å: Chain D: E.245, I.247, T.356, F.358, E.388, R.452, L.480, K.482, Y.483 Ligand excluded by PLIP GOL.55: 7 residues within 4Å: Chain E: V.28, F.114, A.115, E.116, V.151, C.152, D.153 Ligand excluded by PLIP GOL.56: 3 residues within 4Å: Chain E: E.35, G.36, K.39 Ligand excluded by PLIP GOL.57: 5 residues within 4Å: Chain E: K.326, F.411, M.421, A.443, F.447 Ligand excluded by PLIP GOL.58: 4 residues within 4Å: Chain E: Y.117, P.118, M.488, K.490 Ligand excluded by PLIP GOL.59: 4 residues within 4Å: Chain C: T.138 Chain E: S.324, G.325, K.326 Ligand excluded by PLIP GOL.60: 4 residues within 4Å: Chain E: T.2, Q.3, K.133, R.175 Ligand excluded by PLIP GOL.61: 8 residues within 4Å: Chain E: E.245, I.247, T.356, E.388, R.452, L.480, K.482, Y.483 Ligand excluded by PLIP GOL.68: 5 residues within 4Å: Chain C: P.66, H.73 Chain F: R.64, P.66, H.73 Ligand excluded by PLIP GOL.69: 3 residues within 4Å: Chain F: E.35, G.36, K.39 Ligand excluded by PLIP GOL.70: 5 residues within 4Å: Chain F: K.326, F.411, M.421, A.443, F.447 Ligand excluded by PLIP GOL.71: 5 residues within 4Å: Chain F: T.2, Q.3, K.133, E.172, R.175 Ligand excluded by PLIP GOL.72: 9 residues within 4Å: Chain F: E.245, I.247, T.356, F.358, E.388, R.452, L.480, K.482, Y.483 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhan, C. et al., Crystal Structure of Caenorhabditis Elegans Leucine Aminopeptidase. To be Published

Release Date

2006-08-08

Peptides

Leucine aminopeptidase 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Leucine aminopeptidase 1

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