SMTL ID : 2hcj.1

Trypsin-modified Elongation Factor Tu in complex with tetracycline

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.18 Chain B: C.23 Ligands: GDP.3, TAC.7 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.18, H2O.1, H2O.1

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Ligands: TAC.7 No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 17 residues within 4Å: Chain A: H.12, V.13, D.14, H.15, G.16, K.17, T.18, T.19 Chain B: N.77, K.78, D.80, M.81, S.115, A.116, L.117 Ligands: MG.1, TAC.7 18 PLIP interactions: 7 interactions with chain B, 11 interactions with chain A Hydrogen bonds: B:N.77, B:K.78, B:K.78, B:S.115, B:A.116, B:L.117, A:D.14, A:D.14, A:H.15, A:G.16, A:K.17, A:T.18, A:T.18, A:T.19, A:T.19 Salt bridges: B:D.80, A:K.17 Water bridges: A:T.18

3 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain B: T.50, D.51 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.50, B:T.50, B:D.51 NA.5: 2 residues within 4Å: Chain B: F.265, E.290 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.290 NA.6: 5 residues within 4Å: Chain A: Y.32 Chain B: T.13, A.134, G.135, D.138 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.138, B:D.138, A:Y.32

1 x TAC: TETRACYCLINE(Non-covalent)

TAC.7: 9 residues within 4Å: Chain A: T.18 Chain B: T.6, S.7, D.22, C.23, P.24 Ligands: MG.1, SO4.2, GDP.3 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:P.24 Hydrogen bonds: B:D.22 Water bridges: A:D.14, A:T.18, A:T.18

1 x GLV: GLYOXYLIC ACID(Non-covalent)

GLV.8: 2 residues within 4Å: Chain B: F.203, R.204 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heffron, S.E. et al., Molecular complementarity between tetracycline and the GTPase active site of elongation factor Tu. Acta Crystallogr.,Sect.D (2006)

Release Date

2006-10-31

Peptides

Protein chain elongation factor EF-Tu: A
Protein chain elongation factor EF-Tu: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein chain elongation factor EF-Tu

Protein chain elongation factor EF-Tu

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