SMTL ID : 2hdn.2 (8 other biounits)

Trypsin-modified Elongation Factor Tu in complex with tetracycline at 2.8 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.18 Chain B: C.23 Ligands: GDP.2, TAC.3 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.18, H2O.1, H2O.1

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain A: H.12, V.13, D.14, H.15, G.16, K.17, T.18, T.19 Chain B: N.77, K.78, D.80, M.81, S.115, A.116, L.117 Ligands: MG.1, TAC.3 21 PLIP interactions: 8 interactions with chain B, 13 interactions with chain A Hydrogen bonds: B:N.77, B:K.78, B:K.78, B:S.115, B:A.116, B:L.117, A:D.14, A:D.14, A:H.15, A:G.16, A:K.17, A:T.18, A:T.18, A:T.19, A:T.19 Water bridges: B:D.22, A:K.17, A:K.17, A:T.18 Salt bridges: B:D.80, A:K.17

1 x TAC: TETRACYCLINE(Non-covalent)

TAC.3: 8 residues within 4Å: Chain A: T.18 Chain B: T.6, S.7, D.22, C.23, P.24 Ligands: MG.1, GDP.2 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:P.24 Hydrogen bonds: B:D.22 Water bridges: A:T.18, A:T.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heffron, S.E. et al., Molecular complementarity between tetracycline and the GTPase active site of elongation factor Tu. Acta Crystallogr.,Sect.D (2006)

Release Date

2006-10-31

Peptides

Elongation factor EF-Tu: A
Elongation factor EF-Tu: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Elongation factor EF-Tu

Elongation factor EF-Tu

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