SMTL ID : 2hdr.1 (1 other biounit)

AmpC beta-lactamase in complex with 4-Amino-3-hydroxybenzoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: S.61, Y.147, K.312, T.313, G.314, A.315 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.61, A:S.61, A:Y.147, A:T.313, A:T.313, A:A.315 Water bridges: A:N.343 Salt bridges: A:K.312

8 x 4A3: 4-AMINO-3-HYDROXYBENZOIC ACID(Non-covalent)

4A3.2: 5 residues within 4Å: Chain A: V.188, P.189, E.193, Y.196, H.207 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.188 Water bridges: A:Y.196 Salt bridges: A:H.207 pi-Stacking: A:Y.196 4A3.3: 7 residues within 4Å: Chain A: Q.117, N.149, V.208, S.209, Y.218, T.316, G.317 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.208 Hydrogen bonds: A:Q.117, A:Q.117, A:Q.117, A:N.149, A:S.209, A:G.317 Water bridges: A:Y.218 4A3.4: 5 residues within 4Å: Chain A: K.236, P.237, L.238, D.239, R.306 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.238 Hydrogen bonds: A:L.238, A:D.239 Salt bridges: A:K.236, A:R.306 pi-Cation interactions: A:R.306 4A3.5: 4 residues within 4Å: Chain A: P.137, A.138, W.139, A.140 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.140 Hydrogen bonds: A:P.137 4A3.6: 8 residues within 4Å: Chain A: P.274, V.275, N.276, P.277, W.351, N.355, Q.358 Ligands: 4A3.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.351 Hydrogen bonds: A:V.275, A:N.355, A:Q.358 4A3.7: 3 residues within 4Å: Chain A: I.45, Y.200, G.203 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.45, A:I.45 Water bridges: A:I.45 4A3.8: 4 residues within 4Å: Chain A: P.274, V.275, N.276 Ligands: 4A3.6 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.276 Water bridges: A:D.272 4A3.9: 5 residues within 4Å: Chain A: V.122, K.123, P.210, G.211, A.212 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.123 Hydrogen bonds: A:V.122 Water bridges: A:A.212, A:L.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Babaoglu, K. et al., Deconstructing fragment-based inhibitor discovery. Nat.Chem.Biol. (2006)

Release Date

2006-11-07

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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