SMTL ID : 2hrc.1

1.7 angstrom structure of human ferrochelatase variant R115L

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: G.14, Y.59, S.66, I.68, H.277, I.278 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain B: Y.59, S.66, I.68, H.277, I.278 Ligand excluded by PLIP

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 6 residues within 4Å: Chain A: C.132, R.208, S.338, C.339, C.342, C.347 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.132, A:C.339, A:C.342, A:C.347 FES.9: 6 residues within 4Å: Chain B: C.132, R.208, S.338, C.339, C.342, C.347 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.132, B:C.339, B:C.342, B:C.347

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 4 residues within 4Å: Chain A: T.134, H.199, L.201, Y.212 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.134 IMD.10: 4 residues within 4Å: Chain B: T.134, H.199, L.201, Y.212 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.212 Water bridges: B:T.134

6 x CHD: CHOLIC ACID(Non-covalent)

CHD.4: 13 residues within 4Å: Chain A: M.12, L.28, F.29, L.34, I.55, S.133, H.199, L.201, P.202, V.205, V.241, W.246 Ligands: CHD.5 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.29, A:L.201, A:P.202, A:V.241, A:V.241, A:W.246 Hydrogen bonds: A:S.133, A:S.133 Water bridges: A:Q.58, A:Q.58, A:Q.58, A:H.199, A:R.208, A:S.239 CHD.5: 9 residues within 4Å: Chain A: M.35, R.50, L.51, P.202, V.241, M.244, W.246 Ligands: CHD.4, CHD.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:M.35, A:L.51, A:P.202, A:V.241, A:W.246 Water bridges: A:S.204 Salt bridges: A:R.50 CHD.6: 6 residues within 4Å: Chain A: T.36, L.37, P.38, L.43, R.50 Ligands: CHD.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.37, A:P.38, A:L.43 Water bridges: A:T.36 CHD.11: 7 residues within 4Å: Chain B: M.35, R.50, L.51, P.202, M.244 Ligands: CHD.12, CHD.13 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:M.35, B:L.51, B:P.202 Water bridges: B:S.204 Salt bridges: B:R.50 CHD.12: 6 residues within 4Å: Chain B: T.36, L.37, P.38, L.43, R.50 Ligands: CHD.11 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.37, B:L.43 Water bridges: B:R.50 CHD.13: 14 residues within 4Å: Chain B: M.12, L.28, F.29, L.34, M.35, I.55, S.133, H.199, L.201, P.202, V.205, V.241, W.246 Ligands: CHD.11 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.29, B:L.201, B:P.202, B:V.241, B:V.241, B:W.246 Hydrogen bonds: B:S.133 Water bridges: B:Q.58, B:Q.58, B:Q.58, B:H.199, B:R.208, B:R.208, B:S.239

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 8 residues within 4Å: Chain A: P.213, Q.214, S.217, W.237, L.247 Chain B: P.213, S.217, W.237 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:P.213, A:S.217, B:S.217 Water bridges: A:Q.214, A:W.237, B:W.237, B:W.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Medlock, A. et al., Substrate interactions with human ferrochelatase. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-03-13

Peptides

Ferrochelatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ferrochelatase

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