SMTL ID : 2hvy.1

Crystal structure of an H/ACA box RNP from Pyrococcus furiosus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 5 residues within 4Å: Chain B: H.115, H.117, R.166, H.196 Chain C: K.19 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:H.117, C:K.19 Salt bridges: B:H.115, B:H.115, B:H.115, B:R.166, B:R.166 pi-Stacking: B:H.117, B:H.117

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain D: C.8, C.11, C.20, C.23 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.8, D:C.11, D:C.20, D:C.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L. et al., Crystal structure of an H/ACA box ribonucleoprotein particle. Nature (2006)

Release Date

2006-09-12

Peptides

Probable tRNA pseudouridine synthase B: B
Small nucleolar rnp similar to gar1: C
Ribosome biogenesis protein Nop10: D
50S ribosomal protein L7Ae: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

C
B

D
C

E
D

Probable tRNA pseudouridine synthase B

Small nucleolar rnp similar to gar1

Ribosome biogenesis protein Nop10

50S ribosomal protein L7Ae

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