SMTL ID : 2hwf.3 (4 other biounits)

A COMPARISON OF THE ANTI-RHINOVIRAL DRUG BINDING POCKET IN HRV14 AND HRV1A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x JEN: 3-METHOXY-6-[4-(3-METHYLPHENYL)-1-PIPERAZINYL]PYRIDAZINE(Non-covalent)

JEN.1: 9 residues within 4Å: Chain A: I.101, L.103, I.125, Y.147, Y.193, N.215, M.217, I.220, H.241 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.101, A:L.103, A:L.103, A:I.125, A:Y.147, A:I.220 JEN.2: 9 residues within 4Å: Chain E: I.101, L.103, I.125, Y.147, Y.193, N.215, M.217, I.220, H.241 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:I.101, E:L.103, E:L.103, E:I.125, E:Y.147, E:I.220 JEN.3: 9 residues within 4Å: Chain I: I.101, L.103, I.125, Y.147, Y.193, N.215, M.217, I.220, H.241 6 PLIP interactions: 6 interactions with chain I Hydrophobic interactions: I:I.101, I:L.103, I:L.103, I:I.125, I:Y.147, I:I.220 JEN.4: 9 residues within 4Å: Chain M: I.101, L.103, I.125, Y.147, Y.193, N.215, M.217, I.220, H.241 6 PLIP interactions: 6 interactions with chain M Hydrophobic interactions: M:I.101, M:L.103, M:L.103, M:I.125, M:Y.147, M:I.220 JEN.5: 9 residues within 4Å: Chain Q: I.101, L.103, I.125, Y.147, Y.193, N.215, M.217, I.220, H.241 6 PLIP interactions: 6 interactions with chain Q Hydrophobic interactions: Q:I.101, Q:L.103, Q:L.103, Q:I.125, Q:Y.147, Q:I.220 JEN.6: 9 residues within 4Å: Chain U: I.101, L.103, I.125, Y.147, Y.193, N.215, M.217, I.220, H.241 6 PLIP interactions: 6 interactions with chain U Hydrophobic interactions: U:I.101, U:L.103, U:L.103, U:I.125, U:Y.147, U:I.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, K.H. et al., A comparison of the anti-rhinoviral drug binding pocket in HRV14 and HRV1A. J.Mol.Biol. (1993)

Release Date

1994-09-30

Peptides

HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1): AEIMQU
HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2): BFJNRV
HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3): CGKOSW
HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP4): DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1)

HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2)

HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3)

HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP4)

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