SMTL ID : 2i8d.1

Crystal structure of an uncharacterized conserved protein of COG5646 (ZP_00384875.1) from Lactobacillus casei ATCC 334 at 1.69 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: T.119, F.120, W.121, R.123 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: T.119, F.120, W.121, R.123 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain B: R.74 Ligand excluded by PLIP

1 x UNL: UNKNOWN LIGAND(Non-functional Binders)

UNL.2: 9 residues within 4Å: Chain A: W.41, A.66, R.91 Chain B: D.80, D.85, H.86, S.87, W.121, R.123 19 PLIP interactions: 4 interactions with chain A, 15 interactions with chain B Hydrogen bonds: A:R.91, B:H.86, B:H.86, B:H.86, B:H.86, B:H.86, B:H.86, B:S.87, B:W.121 Water bridges: A:Q.43, A:E.68, A:E.68, B:D.80, B:H.86, B:Q.88, B:R.123, B:R.123, B:R.123, B:R.123

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: D.85, H.86, W.121 Ligands: GOL.7 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.85, A:H.86 Water bridges: A:H.86, A:H.86, A:R.123, B:E.68 GOL.6: 2 residues within 4Å: Chain B: K.40, W.41 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.40, B:W.41 Water bridges: B:N.42 GOL.7: 7 residues within 4Å: Chain A: H.86, S.87, W.121 Chain B: Q.43, A.66, R.91 Ligands: GOL.3 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Water bridges: A:D.85 Hydrogen bonds: B:Q.43, B:R.91, B:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an uncharacterized conserved protein of COG5646 (ZP_00384875.1) from Lactobacillus casei ATCC 334 at 1.69 A resolution. To be published

Release Date

2006-09-19

Peptides

Uncharacterized conserved protein of COG5646: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized conserved protein of COG5646