SMTL ID : 2ibx.1

Influenza virus (VN1194) H5 HA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.181, N.252 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.252 NAG-NAG.2: 2 residues within 4Å: Chain C: N.181, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain E: N.181, N.252 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.4: 2 residues within 4Å: Chain A: Q.31, N.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.31, A:N.39 NAG.5: 1 residues within 4Å: Chain B: E.147 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain C: Q.31, N.39 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.31, C:N.39 NAG.7: 1 residues within 4Å: Chain D: E.147 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain E: Q.31, N.39 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:Q.31, E:N.39 NAG.9: 1 residues within 4Å: Chain F: E.147 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:E.147 Hydrogen bonds: F:E.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamada, S. et al., Haemagglutinin mutations responsible for the binding of H5N1 influenza A viruses to human-type receptors. Nature (2006)

Release Date

2006-11-28

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin

Hemagglutinin

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