SMTL ID : 2ic8.1

Crystal structure of GlpG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

12 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)

BNG.1: 11 residues within 4Å: Chain A: E.1, R.2, A.3, L.66, W.67, W.69, Y.70, G.73, A.74 Ligands: BNG.2, BNG.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.67, A:Y.70 Hydrogen bonds: A:E.1 Water bridges: A:A.74, A:A.74 BNG.2: 5 residues within 4Å: Chain A: F.63, Y.70, Q.136, L.139 Ligands: BNG.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.63 BNG.3: 2 residues within 4Å: Chain A: T.88 Ligands: BNG.4 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.88 BNG.4: 4 residues within 4Å: Chain A: F.49, L.89 Ligands: BNG.3, BNG.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.49, A:L.89 BNG.5: 7 residues within 4Å: Chain A: M.10, W.46, F.49, A.52, T.88, A.92 Ligands: BNG.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.52, A:T.88, A:A.92 BNG.6: 5 residues within 4Å: Chain A: F.63, F.142, I.145, W.146 Ligands: BNG.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.63, A:F.63, A:F.142 BNG.7: 6 residues within 4Å: Chain A: S.103, A.160, N.161, G.162, A.163 Ligands: BNG.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.162, A:A.163 BNG.8: 5 residues within 4Å: Chain A: L.144, I.147, V.148, W.151, F.152 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.144, A:I.147, A:V.148, A:F.152 BNG.9: 5 residues within 4Å: Chain A: W.122, E.126, R.137, I.140, L.144 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.122, A:W.122, A:I.140, A:L.144 Hydrogen bonds: A:R.137, A:R.137 BNG.10: 5 residues within 4Å: Chain A: F.102, I.165, A.166, A.169 Ligands: BNG.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.165, A:A.169 BNG.11: 1 residues within 4Å: Chain A: W.32 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.32 BNG.12: 5 residues within 4Å: Chain A: P.36, F.37, D.38, P.39, K.42 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.42, A:K.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Crystal structure of a rhomboid family intramembrane protease. Nature (2006)

Release Date

2006-10-17

Peptides

Protein glpG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Protein glpG

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