SMTL ID : 2ien.1

Crystal structure analysis of HIV-1 protease with a potent non-peptide inhibitor (UIC-94017)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: R.41, D.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.41, A:D.60 Water bridges: A:R.41

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 2 residues within 4Å: Chain A: P.1, Q.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.1 Water bridges: A:Q.2 ACY.6: 5 residues within 4Å: Chain B: P.39, G.40, R.41, Y.59, D.60 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:D.60 Hydrogen bonds: B:D.60

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.5: 22 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50 19 PLIP interactions: 9 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:L.23, A:L.23, A:A.28, A:V.32, A:P.81, A:V.82, A:I.84 Hydrogen bonds: B:D.25, B:G.27, B:G.27, B:D.29, B:D.30, A:D.30, A:D.30, A:I.50 Water bridges: B:I.50, B:I.50 Salt bridges: B:D.25, A:D.25

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain B: W.42, K.55, V.56, R.57, P.79 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.57 GOL.8: 5 residues within 4Å: Chain B: T.12, E.65, I.66, A.67, G.68 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tie, Y. et al., High Resolution Crystal Structures of HIV-1 Protease with a Potent Non-Peptide Inhibitor (Uic-94017) Active Against Multi-Drug-Resistant Clinical Strains. J.Mol.Biol. (2004)

Release Date

2006-10-03

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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