- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.25 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.8: 5 residues within 4Å:- Chain A: D.110, T.184, F.186, D.188, S.190
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.110, A:D.110, A:T.184, A:F.186, A:S.190
CA.15: 5 residues within 4Å:- Chain B: D.110, T.184, F.186, D.188, S.190
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.110, B:T.184, B:T.184, B:D.188, B:S.190
- 2 x CO3: CARBONATE ION(Non-functional Binders)
CO3.9: 4 residues within 4Å:- Chain A: N.95, R.504, R.506
- Ligands: NAG-NAG.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.504, A:R.506, A:R.506
CO3.16: 5 residues within 4Å:- Chain B: N.95, R.96, R.504, R.506
- Ligands: NAG-NAG.4
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.506
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.10: 20 residues within 4Å:- Chain A: M.101, G.104, Q.105, D.108, D.112, A.114, E.258, T.344, F.347, R.348, G.350, H.351, V.354, F.380, L.417, Q.423, L.433, I.436, R.440
- Ligands: FMT.13
18 PLIP interactions:18 interactions with chain A,- Hydrophobic interactions: A:Q.105, A:D.108, A:E.258, A:F.347, A:F.347, A:R.348, A:V.354, A:F.380, A:L.417, A:L.417, A:L.433, A:L.433
- Hydrogen bonds: A:D.112, A:A.114
- Salt bridges: A:R.348, A:R.348, A:R.440
- Metal complexes: A:H.351
HEM.17: 21 residues within 4Å:- Chain B: M.101, G.104, Q.105, D.108, D.112, F.113, A.114, E.116, R.255, E.258, T.344, F.347, R.348, H.351, V.354, F.380, L.417, Q.423, I.436, R.440
- Ligands: FMT.20
13 PLIP interactions:13 interactions with chain B,- Hydrophobic interactions: B:Q.105, B:Q.105, B:E.258, B:F.347, B:V.354, B:F.380, B:L.417, B:L.417
- Hydrogen bonds: B:A.114, B:R.255
- Salt bridges: B:R.348, B:R.440
- Metal complexes: B:H.351
- 6 x FMT: FORMIC ACID(Non-functional Binders)
FMT.11: 5 residues within 4Å:- Chain A: E.363, R.397, H.558, I.559, T.560
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.397, A:R.397, A:T.560
FMT.12: 8 residues within 4Å:- Chain A: A.44, R.45, W.46, L.47, S.340, N.341, V.342, W.452
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:W.46, A:L.47, A:N.341, A:V.342
FMT.13: 4 residues within 4Å:- Chain A: H.109, R.255, E.258
- Ligands: HEM.10
No protein-ligand interaction detected (PLIP)FMT.18: 7 residues within 4Å:- Chain B: E.363, Y.365, R.397, H.558, I.559, T.560, K.561
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.363, B:T.560
FMT.19: 8 residues within 4Å:- Chain B: A.44, R.45, W.46, L.47, S.340, N.341, V.342, W.452
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:W.46, B:L.47, B:N.341, B:V.342
FMT.20: 4 residues within 4Å:- Chain B: Q.105, H.109, R.255
- Ligands: HEM.17
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.105
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sheikh, I.A. et al., Crystal structure of sheep lactoperoxidase at 3.25 A resolution reveals the binding sites for formate. To be Published
- Release Date
- 2006-10-17
- Peptides
- milk lactoperoxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.25 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x CO3: CARBONATE ION(Non-functional Binders)
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 6 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sheikh, I.A. et al., Crystal structure of sheep lactoperoxidase at 3.25 A resolution reveals the binding sites for formate. To be Published
- Release Date
- 2006-10-17
- Peptides
- milk lactoperoxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B