SMTL ID : 2il1.1 (1 other biounit)

Crystal structure of a predicted human GTPase in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.40 Ligands: GDP.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.40, H2O.1, H2O.1, H2O.1

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: D.178, E.179 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.178, A:E.179, A:E.179, H2O.1

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 17 residues within 4Å: Chain A: S.34, R.35, G.36, V.37, G.38, K.39, T.40, S.41, N.139, K.140, D.142, C.143, S.170, A.171, K.172 Ligands: MG.1, UNX.7 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:S.34, A:G.36, A:V.37, A:G.38, A:K.39, A:T.40, A:S.41, A:S.41, A:N.139, A:K.140, A:K.140, A:A.171, A:K.172 Water bridges: A:T.40 Salt bridges: A:K.39, A:D.142

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 3 residues within 4Å: Chain A: C.167, N.176, E.179 No protein-ligand interaction detected (PLIP) UNX.5: 1 residues within 4Å: Chain A: Q.160 No protein-ligand interaction detected (PLIP) UNX.6: 2 residues within 4Å: Chain A: D.142, D.173 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: C.143 Ligands: GDP.3 No protein-ligand interaction detected (PLIP) UNX.8: 2 residues within 4Å: Chain A: K.122, D.125 No protein-ligand interaction detected (PLIP) UNX.9: 4 residues within 4Å: Chain A: D.142, C.143, E.144, T.145 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Crystal structure of a predicted human GTPase in complex with GDP. To be Published

Release Date

2006-10-10

Peptides

Rab12: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rab12

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