SMTL ID : 2iua.1

C. trachomatis LpxD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-trimer

Ligands

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 2 residues within 4Å: Chain A: H.310, P.326 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.310

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.84, R.85, T.86, T.101, S.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.85, A:T.86 SO4.3: 2 residues within 4Å: Chain A: K.195, R.196 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.195, A:R.196 SO4.4: 1 residues within 4Å: Chain A: K.36 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.36 SO4.7: 5 residues within 4Å: Chain B: S.84, R.85, T.86, T.101, S.102 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.85, B:T.86, B:T.86 Salt bridges: B:R.85 SO4.8: 4 residues within 4Å: Chain B: I.305, T.320, K.321, S.322 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.322 SO4.9: 3 residues within 4Å: Chain B: K.195, R.196, D.233 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.195, B:R.196 SO4.11: 3 residues within 4Å: Chain C: K.195, R.196, D.233 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.233 Salt bridges: C:R.196 SO4.12: 3 residues within 4Å: Chain C: R.85, I.100, S.102 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.102 Salt bridges: C:R.85

3 x PLM: PALMITIC ACID(Non-covalent)

PLM.5: 11 residues within 4Å: Chain A: A.284, G.300, I.301, T.302, V.319, T.320, P.333 Chain B: G.297, Q.298, M.314, A.315 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:A.315, B:A.315, A:T.302, A:P.333 Water bridges: B:G.297 Hydrogen bonds: A:I.301 PLM.6: 8 residues within 4Å: Chain A: Q.298, A.315, Q.316 Chain C: G.300, I.301, T.302, V.319, T.320 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.315 Hydrogen bonds: A:Q.298 PLM.10: 12 residues within 4Å: Chain B: G.300, I.301, G.318, V.319, T.320, A.332, P.333 Chain C: Q.298, A.315, Q.316, G.331, A.332 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:A.315, B:T.320, B:P.333 Hydrogen bonds: C:Q.298, B:I.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buetow, L. et al., Structure and Reactivity of Lpxd, the N-Acyltransferase of Lipid a Biosynthesis. Proc.Natl.Acad.Sci.USA (2007)

Release Date

2007-02-20

Peptides

UDP-3-O-[3-HYDROXYMYRISTOYL] GLUCOSAMINE N-ACYLTRANSFERASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

UDP-3-O-[3-HYDROXYMYRISTOYL] GLUCOSAMINE N-ACYLTRANSFERASE

Related Entries With Identical Sequence